But each version will have exclusive trophies!
Trophies will be retuning in the next installments of the Super Smash Bros. series releasing on Wii U and 3DS in 2014.
This information comes from the official Super Smash Bros. site where a trophy featuring Saria was shown for the 3DS. Masahiro Sakurai, the game's director, said that both versions of the game will have exclusive trophies. The Wii U version will feature trophies based on home console games while the 3DS version will feature trophies based on handhelds.